compare_daa_results     Compare the Consistency of Statistically
                        Significant Features
compare_gsea_daa        Compare GSEA and DAA results
compare_metagenome_results
                        Compare Metagenome Results
daa_annotated_results_df
                        Differentially Abundant Analysis Results with
                        Annotation
daa_results_df          DAA Results Dataset
ggpicrust2              This function integrates pathway
                        name/description annotations, ten of the most
                        advanced differential abundance (DA) methods,
                        and visualization of DA results.
ggpicrust2_extended     Integrated analysis with ggpicrust2 including
                        GSEA
gsea_pathway_annotation
                        Annotate GSEA results with pathway information
import_MicrobiomeAnalyst_daa_results
                        Import Differential Abundance Analysis (DAA)
                        results from MicrobiomeAnalyst
kegg_abundance          KEGG Abundance Dataset
ko2kegg_abundance       Convert KO abundance in picrust2 export files
                        to KEGG pathway abundance
ko_abundance            KO Abundance Dataset
metacyc_abundance       MetaCyc Abundance Dataset
metadata                Metadata for ggpicrust2 Demonstration
pathway_annotation      Pathway information annotation
pathway_daa             Differential Abundance Analysis for Predicted
                        Functional Pathways
pathway_errorbar        The function pathway_errorbar() is used to
                        visualize the results of functional pathway
                        differential abundance analysis as error bar
                        plots.
pathway_gsea            Gene Set Enrichment Analysis for PICRUSt2
                        output
pathway_heatmap         Create pathway heatmap
pathway_pca             Perform Principal Component Analysis (PCA) on
                        functional pathway abundance data
safe_extract            Safely Extract Elements from a List
visualize_gsea          Visualize GSEA results
