xnet-package	xnet-package
alpha	getters_linearFilter
alpha,linearFilter-method	getters_linearFilter
as_tskrr	as_tuned
as_tskrr,tskrr-method	as_tuned
as_tskrr,tskrrImpute-method	as_tuned
as_tskrr,tskrrTune-method	as_tuned
as_tuned	as_tuned
as_tuned,tskrrHeterogeneous-method	as_tuned
as_tuned,tskrrHomogeneous-method	as_tuned
colMeans,linearFilter-method	getters_linearFilter
colnames,tskrr-method	labels
create_grid	create_grid
dim,tskrr-method	dim-tskrr-method
dim.tskrr	dim-tskrr-method
dimnames,tskrr-method	labels
dimnames.tskrr	labels
drugSim	drugTargetInteraction
drugtarget	drugTargetInteraction
drugTargetInteraction	drugTargetInteraction
eigen2hat	eigen2hat
eigen2map	eigen2hat
eigen2matrix	eigen2hat
Extract-permtest	getters-permtest
fitted,linearFilter-method	fitted
fitted,tskrr-method	fitted
fitted.linearFilter	fitted
fitted.tskrr	fitted
getters_linearFilter	getters_linearFilter
get_eigen	getters-tskrr
get_grid	getters-tskrrTune
get_kernel	getters-tskrr
get_kernelmatrix	getters-tskrr
get_loo_fun	get_loo_fun
get_loo_fun,character-method	get_loo_fun
get_loo_fun,linearFilter-method	get_loo_fun
get_loo_fun,tskrrHeterogeneous-method	get_loo_fun
get_loo_fun,tskrrHomogeneous-method	get_loo_fun
get_loo_fun,tskrrTune-method	get_loo_fun
get_loss_values	getters-tskrrTune
has_hat	getters-tskrr
has_imputed_values	getters-tskrrImpute
has_onedim	getters-tskrrTune
hat	hat
hat,tskrrHeterogeneous-method	hat
hat,tskrrHomogeneous-method	hat
impute_tskrr	impute_tskrr
impute_tskrr.fit	impute_tskrr.fit
is_heterogeneous	getters-tskrr
is_homogeneous	getters-tskrr
is_imputed	getters-tskrrImpute
is_square	valid_dimensions
is_symmetric	is_symmetric
is_tskrr	getters-tskrr
is_tuned	getters-tskrrTune
Kmat_y2h_sc	proteinInteraction
labels,tskrr-method	labels
labels.tskrr	labels
lambda	getters-tskrr
lambda,tskrrHeterogeneous-method	getters-tskrr
lambda,tskrrHomogeneous-method	getters-tskrr
linearFilter	linearFilter-class
linearFilter-class	linearFilter-class
linear_filter	linear_filter
loo	loo
loo,linearFilter-method	loo
loo,tskrrHeterogeneous-method	loo
loo,tskrrHomogeneous-method	loo
loo.b	looInternal
loo.c	looInternal
loo.e.skew	looInternal
loo.e.sym	looInternal
loo.e0.skew	looInternal
loo.e0.sym	looInternal
loo.i	looInternal
loo.i.lf	looInternal
loo.i0	looInternal
loo.i0.lf	looInternal
loo.r	looInternal
loo.v	looInternal
loo_internal	looInternal
loss	loss
loss,permtest-method	loss
loss,tskrr-method	loss
loss,tskrrTune-method	loss
loss_auc	loss_functions
loss_functions	loss_functions
loss_mse	loss_functions
match_labels	match_labels
mean,linearFilter-method	getters_linearFilter
mean.linearFilter	getters_linearFilter
na_removed	getters_linearFilter
na_removed,linearFilter-method	getters_linearFilter
permtest	permtest
permtest,tskrrHeterogeneous-method	permtest
permtest,tskrrHomogeneous-method	permtest
permtest,tskrrTune-method	permtest
permtest-class	permtest-class
permutations	getters-permtest
plot.tskrr	plot.tskrr
plot_grid	plot_grid
predict,tskrr-method	predict
predict.tskrr	predict
print.permtest	permtest
proteinInteraction	proteinInteraction
residuals	residuals.tskrr
residuals,tskrr-method	residuals.tskrr
residuals.tskrr	residuals.tskrr
response	getters-tskrr
response,tskrr-method	getters-tskrr
rowMeans,linearFilter-method	getters_linearFilter
rownames,tskrr-method	labels
symmetry	getters-tskrr
targetSim	drugTargetInteraction
test_symmetry	test_symmetry
tskrr	tskrr
tskrr-class	tskrr-class
tskrr.fit	tskrr.fit
tskrrHeterogeneous	tskrrHeterogeneous-class
tskrrHeterogeneous-class	tskrrHeterogeneous-class
tskrrHomogeneous	tskrrHomogeneous-class
tskrrHomogeneous-class	tskrrHomogeneous-class
tskrrImpute	tskrrImpute-class
tskrrImpute-class	tskrrImpute-class
tskrrImputeHeterogeneous	tskrrImputeHeterogeneous-class
tskrrImputeHeterogeneous-class	tskrrImputeHeterogeneous-class
tskrrImputeHomogeneous	tskrrImputeHomogeneous-class
tskrrImputeHomogeneous-class	tskrrImputeHomogeneous-class
tskrrTune	tskrrTune-class
tskrrTune-class	tskrrTune-class
tskrrTuneHeterogeneous	tskrrTuneHeterogeneous-class
tskrrTuneHeterogeneous-class	tskrrTuneHeterogeneous-class
tskrrTuneHomogeneous	tskrrTuneHomogeneous-class
tskrrTuneHomogeneous-class	tskrrTuneHomogeneous-class
tune	tune
tune,matrix-method	tune
tune,tskrrHeterogeneous-method	tune
tune,tskrrHomogeneous-method	tune
update	update
update,tskrrHeterogeneous-method	update
update,tskrrHomogeneous-method	update
valid_dimensions	valid_dimensions
valid_labels	valid_labels
weights	weights
weights,tskrrHeterogeneous-method	weights
weights,tskrrHomogeneous-method	weights
which_imputed	getters-tskrrImpute
xnet	xnet-package
[,permtest-method	getters-permtest
