Parallel and Memory-Efficient Ecological Diversity Metrics

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Documentation for package ‘ecodive’ version 2.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ace	Alpha Diversity Metrics
adiv_functions	Alpha Diversity Metrics
aitchison	Beta Diversity Metrics
alpha_div	Alpha Diversity Wrapper Function
bdiv_functions	Beta Diversity Metrics
berger	Alpha Diversity Metrics
beta_div	Beta Diversity Wrapper Function
bhattacharyya	Beta Diversity Metrics
bray	Beta Diversity Metrics
brillouin	Alpha Diversity Metrics
canberra	Beta Diversity Metrics
chao1	Alpha Diversity Metrics
chebyshev	Beta Diversity Metrics
chord	Beta Diversity Metrics
clark	Beta Diversity Metrics
divergence	Beta Diversity Metrics
euclidean	Beta Diversity Metrics
ex_counts	Example counts matrix
ex_tree	Example phylogenetic tree
faith	Alpha Diversity Metrics
fisher	Alpha Diversity Metrics
generalized_unifrac	Beta Diversity Metrics
gower	Beta Diversity Metrics
hamming	Beta Diversity Metrics
hellinger	Beta Diversity Metrics
horn	Beta Diversity Metrics
inv_simpson	Alpha Diversity Metrics
jaccard	Beta Diversity Metrics
jensen	Beta Diversity Metrics
jsd	Beta Diversity Metrics
list_metrics	Find and Browse Available Metrics
lorentzian	Beta Diversity Metrics
manhattan	Beta Diversity Metrics
margalef	Alpha Diversity Metrics
match_metric	Find and Browse Available Metrics
matusita	Beta Diversity Metrics
mcintosh	Alpha Diversity Metrics
menhinick	Alpha Diversity Metrics
minkowski	Beta Diversity Metrics
morisita	Beta Diversity Metrics
motyka	Beta Diversity Metrics
normalized_unifrac	Beta Diversity Metrics
n_cpus	Number of CPU Cores
observed	Alpha Diversity Metrics
ochiai	Beta Diversity Metrics
psym_chisq	Beta Diversity Metrics
rarefy	Rarefy OTU counts.
read_tree	Read a newick formatted phylogenetic tree.
shannon	Alpha Diversity Metrics
simpson	Alpha Diversity Metrics
soergel	Beta Diversity Metrics
sorensen	Beta Diversity Metrics
squared_chisq	Beta Diversity Metrics
squared_chord	Beta Diversity Metrics
squared_euclidean	Beta Diversity Metrics
squares	Alpha Diversity Metrics
topsoe	Beta Diversity Metrics
unweighted_unifrac	Beta Diversity Metrics
variance_adjusted_unifrac	Beta Diversity Metrics
wave_hedges	Beta Diversity Metrics
weighted_unifrac	Beta Diversity Metrics