Automated Method for Verbal Autopsy

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Documentation for package ‘openVA’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

codeVA	Running automated method on VA data
ConvertData	Converting Input data with different coding scheme to standard format
ConvertData.phmrc	Convert standard PHMRC data into binary indicator format
csmf_eava	Calculate CSMF from EAVA::codEAVA output
DataEAVA	1,736 records of Sample Input
getCCC	Calculate Overall chance-corrected concordance (CCC)
getCSMF	Obtain CSMF from fitted model
getCSMF_accuracy	Calculate CSMF accuracy
getIndivProb	Extract individual distribution of cause of death
getPHMRC_url	Get the URL to the PHMRC dataset
getTopCOD	Extract the most likely cause(s) of death
grouping_eava_child	Mapping for child causes of death to the list used by the EAVA algorithm.
grouping_eava_neonate	Mapping for neonate causes of death to the list used by the EAVA algorithm.
interVA_train	Extended InterVA method for non-standard input
NeonatesVA5	200 records of Sample Input
openVA_status	Check openVA packages status
openVA_update	Update openVA packages
plot.eava	Create CSMF plot for EAVA::codEAVA output
plot.vacalibration	Plot CSMF from a vacalibration object
plotVA	Plot top CSMF for a fitted model
prepCalibration	Convert the assigned causes to the format expected by vacalibration::vacalibration().
print.eava	Print method for "eava" class.
print.eava_summary	Print method for summarizing results from EAVA algorithm.
print.vacalibration	Print method for vacalibration model fits
print.vacalibration_summary	Print method for summarizing vacalibration results
RandomVA6	1,736 records of Sample Input
stackplotVA	plot grouped CSMF from a "insilico" object
summary.eava	Summary of results obtained by fitting the EAVA algorithm.
summary.vacalibration	Summary of results obtained by vacalibration