exampleBAM              An example BAM file.
exampleMutCall          An example mutated read ID file.
exampleMutation         An example mutation file.
fun_analysis            Analyzing function.
fun_convert             Mutation data file converter
fun_hairpin_check       Hairpin-structure sequence check function
fun_hairpin_trimming    Adapter sequence trimming function
fun_homology            Homology check function.
fun_insert_length       Insert length checker for BAM file
fun_load_bam            BAM file loader
fun_load_chr_no         Chromosome number loading function.
fun_load_genome         Genome loading function.
fun_load_id             Mutation-supporting read ID files loader
fun_load_mutation       Mutation data file loader
fun_load_mutation_gz    Mutation data file loader
fun_read_check          Read check function.
fun_repeat_check        Repeat check function.
fun_save                Save function.
fun_save_gz             Save function.
fun_setting             Mutated position search function.
fun_summary             Summarizing function.
fun_support             Supporting length calculation function.
fun_zero                Devide function without 0/0 errors
homology_searched       An example sequence infromation file.
msec_analyzed           An example mutation file.
msec_homology_searched
                        An example mutation file.
msec_read_checked       An example mutation file.
msec_summarized         An example mutation file.
mut_depth_checked       An example sequence infromation file.
