Eukaryote_nonphoto      An original and an augmented real genomic
                        networks
Eukaryote_photo         An original and an augmented real genomic
                        networks
Plasmids                An original and an augmented real genomic
                        networks
SDDE-package            Shortcuts, Detours and Dead Ends (SDDE) Path
                        Types in Genome Similarity Networks
SDDE.version            Version information.
Sample_1                An original network X with 11 nodes and an
                        augmented network Y of 14 nodes
Sample_2                An network X of 6 nodes and an augmented
                        network Y with 7 nodes
Viruses                 An original and an augmented real genomic
                        networks
complete_network        compare two given networks (original and
                        augmented, presented as undirected graphs)
                        using a path analysis
complete_restart        compares two given networks (original and
                        augmented, presented as undirected graphs)
                        using a path analysis
complete_trace          return properties of a single path in two given
                        networks (original and augmented, presented as
                        undirected graphs) using a path analysis
g1                      generic name for network X
g2                      generic name for network Y
info_network            returns additional information regarding the
                        networks X and Y (original and augmented).
info_node               returns additional information regarding the
                        nodes of networks X and Y (original and
                        augmented)
load_network            is a helper function to load networks from
                        files
plot_network            Helper function to display an illustration of a
                        network.
random_network          creates random augmented networks X and Y
sample_network          compares two networks using a path analysis of
                        total pathways
sample_path             is a helper function that creates a vector of
                        non-repeating pathways to investigate
save_network            is an helper function to save an illustration
                        of a network into a file
save_network_big        Helper function to save an illustration of a
                        network to file with more than 50 nodes.
