CP.ar1.se               Compute a conditional probability of observing
                        a set of counts as extreme as the new
                        observations of a subjectvisit given the
                        previous observations of the same subject based
                        on the negative binomial mixed-effect AR(1)
                        model.
CP.se                   Compute a conditional probability of observing
                        a set of counts as extreme as the new
                        observations of a subject given the previous
                        observations from the same subject based on the
                        negative binomial mixed effect independent
                        model.
RElmeNB                 Calculate predicted values of E(Gi|Yi) given
                        the estimates of parameters
fitParaAR1              Performs the maximum likelihood estimation for
                        the negative binomial mixed-effect AR(1) model
fitParaIND              Performs the maximum likelihood estimation for
                        the negative binomial mixed-effect independent
                        model
fitSemiAR1              Fit the semi-parametric negative binomial
                        mixed-effect AR(1) model.
fitSemiIND              Fit the semi-parametric negative binomial
                        mixed-effect independent model.
index.batch             The main function to compute the point
                        estimates and 95% confidence intervals (for a
                        parametric model) of the conditional
                        probabilities Pr(q(Y[i,new])>=q(y[i,new])|
                        Y[i,pre]=y[i,pre]) for multiple subjects.
lmeNB                   Performs the maximum likelihood estimation for
                        the negative binomial mixed-effect model. This
                        function is a wrapper for 'fitParaIND',
                        'fitParaAR1', 'fitSemiIND' and 'fitSemiAR1'.
rNBME.R                 Simulate a dataset from the negative binomial
                        mixed-effect independent/AR(1) model
