IDsets                  Handle sets of metagenome and project IDs
[.biom                  Take part of (subset) BIOM data
biomRequest             Get annotation information of samples as BIOM
                        data
boxplot.biom            Summarize BIOM data in boxplots
demoObjects             BIOM annotation data for certain metagenomes
                        and projects
dimnames<-.biom         Change row and column identifiers of BIOM data
dir.MGRAST              List directory of projects
distx                   Calculate distances with optional grouping and
                        other features
image.biom              Display heatmap of BIOM data with optional
                        dendrograms
merge.biom              Merge BIOM data
metadata.character      Get metadata of projects and metagenomes
princomp.biom           Compute and plot principal coordinates of BIOM
                        data
rows                    Search and change row or column annotations of
                        BIOM data
rowstats                Apply selected significance test across rows
search.MGRAST           Find metagenomes matching specified criteria
transform.biom          Apply mathematical transformations to BIOM data
