# Generated by roxygen2: do not edit by hand

export(concatenateAnnotationResult)
export(initUTRAnnotation)
export(partitionVariantFile)
export(runUTRAnnotation)
import(AnnotationHub)
import(data.table)
import(readr)
import(stringr)
importFrom(AnnotationFilter,GRangesFilter)
importFrom(AnnotationFilter,TxBiotypeFilter)
importFrom(BiocGenerics,strand)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,PWM)
importFrom(Biostrings,PWMscoreStartingAt)
importFrom(Biostrings,consensusMatrix)
importFrom(Biostrings,reverseComplement)
importFrom(GenomicFeatures,transcripts)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,makeGRangesListFromDataFrame)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,width)
importFrom(IRanges,IRanges)
importFrom(IRanges,subsetByOverlaps)
importFrom(biomaRt,getBM)
importFrom(biomaRt,getSequence)
importFrom(biomaRt,listEnsemblArchives)
importFrom(biomaRt,useEnsembl)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(doParallel,registerDoParallel)
importFrom(dplyr,bind_rows)
importFrom(dplyr,left_join)
importFrom(dplyr,select)
importFrom(dplyr,transmute)
importFrom(ensembldb,EnsDb)
importFrom(ensembldb,ensDbFromAH)
importFrom(ensembldb,ensemblVersion)
importFrom(ensembldb,organism)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(keras,load_model_hdf5)
importFrom(rtracklayer,import)
importFrom(stats,complete.cases)
importFrom(stats,predict)
importFrom(stringr,str_c)
importFrom(stringr,str_split)
importFrom(tidyr,separate_rows)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(vcfR,read.vcfR)
