HMPTrees-package        Object Oriented Data Analysis of Taxonomic
                        Trees
checkTreeValidity       Check Validity of an RDP-Based Taxonomic Tree
compareTwoDataSets      Likelihood-Ratio-Test Statistics to Compare the
                        Distribution of 2 Sets of RDP-Based Taxonomic
                        Trees
createAndPlot           Create and Plot a Tree from a Data Set
createTrees             Create a Tree Object
displayLegend           Displays Tree Plot Legend
formatData              Formats a Data Set
generateTree            Generate Test Trees
getMLEandLoglike        Get MLE and Log Likelihood of a Data Set
mergeDataSets           Merge Multiple Data Sets
pairedCompareTwoDataSets
                        Likelihood-Ratio-Test Statistics to Compare the
                        Distribution of 2 Paired Sets of RDP-Based
                        Taxonomic Trees
plotTree                Plots a Tree Object
plotTreeDataMDS         Plot an MDS Plot of a Group of Trees
saliva                  Saliva Data Set
stool                   Stool Data Set
throat                  Throat Data Set
trimToTaxaLevel         Trim a Tree to a Given Level
