MDplot_argument-class   Arguments for bash script interface
TIcurve                 Thermodynamic integration plot
clusters                Cluster bar plot
clusters_ts             Cluster timeseries plot
dssp                    DSSP plot for secondary structure elements
                        (proteins)
dssp_ts                 DSSP timeseries plot for secondary structure
                        elements (proteins)
hbond                   Plot hydrogen bond summary
hbond_ts                Plot hydrogen bond timeseries
load_TIcurve            Loading function for thermodynamic integration
                        function 'TIcurve()'
load_clusters           Loading cluster information
load_clusters_ts        Loading timeseries cluster information
load_dssp               Load DSSP information
load_dssp_ts            Load DSSP timeseries
load_hbond              Loading hydrogen bond data
load_hbond_ts           Loading hydrogen bonds timeseries
load_noe                Loading NOE violations
load_ramachandran       Load dihedral information (Ramachandran plot
                        input)
load_rmsd               Loading function for 'rmsd()'
load_rmsf               Loading function for 'rmsf()'
load_timeseries         Loading function for 'timeseries()'
load_xrmsd              Loading function for 'xrmsd()'
noe                     Plot NOE violations
ramachandran            Ramachandran plot for two dihedral angles
rmsd                    Root-mean-square-deviation (RMSD) plot
rmsd_average            Root-mean-square-deviation (RMSD) average plot
rmsf                    Root-mean-square-fluctuation (RMSF) plot
timeseries              General timeseries plotting function
translate_aminoacids    Function to translate between canonical and
                        GROMOS amino acid abbreviations
xrmsd                   XRMSD plot in heatmap style
