atomdeps                Atom parameters and definitions for side chains
atomtype                Atom Type Table
calCo                   Calculate Cartesian coordinates for 1-4 bonded
                        atoms
calscco                 Calculate Cartesian coordinates of side chains
dfireE                  DFIRE Energy Evaluation for Protein
                        Conformations
nat879                  Sample Protein Conformation 1
pdbrmsd                 Root Mean Squared Deviation (RMSD) of Two
                        Protein Conformations
pred879                 Sample Protein Conformation 2
torsion                 Calculate dihedral angle formed by four atoms
