beetles                 Beetle occurrence data from (Ulrich and
                        Zalewski 2006).
cooccur                 A function to calculate pairwise co-occurrence
                        patterns from a community dataset
cooccur-package         cooccur: Probabilistic Species Co-occurrence
                        Analysis in R
create.N.matrix         Function to create spp x spp matrix of
                        potential co-occurring sites (N) from a
                        potential spp x site matrix.
effect.sizes            Function to extract species pairwise effect
                        sizes from an object of class 'cooccur'.
finches                 Finch occurrence data from (Sanderson 2000).
obs.v.exp               Function to plot a visualization of the
                        observed versus expected oc-occurrences from an
                        analysis stored in a 'coccurr' object.
pair                    Function to examine co-occurrence patterns for
                        an individual species.
pair.attributes         Function to create a species-wise summary of
                        co-occurrence patterns.
pair.profile            Function to produce a visualization of species
                        contributions to co-occurrence patterns.
plot.cooccur            Function for producing a heatmap co-occurrence
                        visualization.
print.cooccur           Print significant pairwise species results.
prob.table              Function to extract the probability table from
                        an analysis of species co-occurrence.
rodents                 Rodent occurrence data from (Brown and Kurzius
                        1987).
summary.cooccur         Method to summarize co-occurrence patterns.
