cal_fn                  'cal_fn'
cal_fp                  'cal_fp'
calculate_percent       'calculate_percent'
calculate_simpson       'calculate_simpson'
check_fasta_meta_mapping
                        'check_fasta_meta_mapping'
check_percent           'check_percent'
extend_length           'extend_length'
find_optimised_snps     'find_optimised_snps'
full_merge              'full_merge'
full_merge_1            'full_merge_1'
generate_kmer_search_string
                        'generate_kmer_search_string'
generate_kmers          'generate_kmers'
generate_pattern        'generate_pattern'
generate_snp_search_string
                        'generate_snp_search_string'
get_metric_fun          'get_metric_fun'
identify_overlaps       'identify_overlaps'
iterate_merge           'iterate_merge'
match_count             'match_count'
merge_fasta             'merge_fasta'
output_result           'output_result'
output_to_files         'output_to_files'
process_allele          'process_allele'
read_fasta              'read_fasta'
read_sequences_from_fastq
                        'read_sequences_from_fastq'
resolve_IUPAC_missing   'resolve_IUPAC_missing'
reverse_complement      'reverse_complement'
view_percent            'view_percent'
view_simpson            'view_simpson'
write_fasta             'write_fasta'
