Claddis-package         Measuring Morphological Diversity and
                        Evolutionary Tempo
align_matrix_block      Aligns a phylogenetic matrix block
assign_taxa_to_bins     Assign taxa to time bins
bin_changes             Counts the changes in a series of time bins
bin_character_completeness
                        Phylogenetic character completeness in
                        time-bins
bin_edge_lengths        Edge-lengths present in time-bins
build_cladistic_matrix
                        Creates a morphological data file from a matrix
calculate_morphological_distances
                        Get distance matrices from a cladistic matrix
compactify_matrix       Collapses matrix to unique character state
                        distributions
date_nodes              Returns node ages for a time-scaled tree
day_2016                Character-taxon matrix from Day et al. 2016
estimate_ancestral_states
                        Ancestral Character State Estimation
find_descendant_edges   Gets descendant edges of an internal node
find_linked_edges       Find linked edges for a tree
find_minimum_spanning_edges
                        Get edges of minimum spanning tree
find_mrca               Find ancestor
fix_root_time           Fixes root.time after taxa have been pruned
                        from a tree
gauthier_1986           Character-taxon matrix from Gauthier 1986
map_dollo_changes       Stochastic Character Map For Dollo Character
map_stochastic_changes
                        Finds all state changes on a tree using
                        stochastic character mapping
match_tree_edges        Edge matching function
michaux_1989            Character-taxon matrix from Michaux 1989
ordinate_cladistic_matrix
                        Principal Coordinates on a Cladistic Matrix
partition_time_bins     Time bin partitioner
plot_changes_on_tree    Plots character changes on branches
plot_chronophylomorphospace
                        Chronophylomorphospace Plot
plot_morphospace        Plot Morphopace
plot_morphospace_stack
                        Plot stacked ordination spaces
plot_multi_morphospace
                        Plot Multiple Morphopaces
plot_rates_character    Visualize a rate test time series
plot_rates_time         Visualize a rate test time series
plot_rates_tree         Visualize a rate test time series
print.cladisticMatrix   Compact display of a cladistic matrix
prune_cladistic_matrix
                        Prunes a character matrix of characters or taxa
read_nexus_matrix       Reads in a morphological #NEXUS data file
safe_taxonomic_reduction
                        Safe Taxonomic Reduction
safe_taxonomic_reinsertion
                        Reinsert Safely Removed Taxa Into A Tree
test_rates              Discrete character rates across trees, time,
                        and character types
trim_marginal_whitespace
                        Trims marginal whitespace
trim_matrix             Trims a morphological distance matrix
write_nexus_matrix      Writes out a morphological #NEXUS data file
write_tnt_matrix        Writes out a morphological TNT data file
