Package: InteRD
Type: Package
Title: The Integrated and Robust Deconvolution
Version: 0.1.1
Authors@R: c(person("Chixiang","Chen",email="chencxxy@hotmail.com",role=c("cre","aut")),
        person("Yuk Yee","Leung",email="yyee@mail.med.upenn.edu",role="aut"),
        person("Matei","Lonita",email="matei.ionita@pennmedicine.upenn.edu",role="aut"),
        person("Li-San","Wang",email="lswang@pennmedicine.upenn.edu",role="aut"),
        person("Mingyao","Li",email="mingyao@pennmedicine.upenn.edu",role="aut"))
Description: We developed the Integrated and Robust Deconvolution algorithm to infer cell-type proportions from target bulk RNA-seq data. This package is able to effectively integrate deconvolution results from multiple scRNA-seq datasets and calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Moreover, the proposed algorithm is robust to inaccurate external information imposed in the deconvolution system.
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.2.1
URL: https://github.com/chencxxy28/InteRD
BugReports: https://github.com/chencxxy28/InteRD/issues
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews:
Imports: Rcpp (>= 0.11.0), limSolve, cowplot, ggplot2, pheatmap,
        stats,DescTools, mgcv, reshape2
Depends: R (>= 3.5.0), Biobase
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2022-08-11 17:55:05 UTC; chixiang.chen
Author: Chixiang Chen [cre, aut],
  Yuk Yee Leung [aut],
  Matei Lonita [aut],
  Li-San Wang [aut],
  Mingyao Li [aut]
Maintainer: Chixiang Chen <chencxxy@hotmail.com>
Repository: CRAN
Date/Publication: 2022-08-12 07:20:11 UTC
Built: R 4.2.0; ; 2022-08-13 12:51:02 UTC; unix
