Clust_Valid             Cluster Evaluation by External Measures
EliminateCpxRedundance
                        Hierarchical Clustering of Modules
MCL_clustering          MCL clustering
MCL_tuning              MCL Hyperparameters Tuning
calculate_PPIscore      Calculate Pairwise Protein Profile Similarity
                        using Different Metrics
cluster_tuning          ClusterONE Hyperparameters Tuning
data_filtering          Data Filtering
enrichmentCPX           Functional Enrichment Analysis for Predicted
                        Complexes
ensemble_model          Predict Interactions via Ensemble Learning
                        Method
exampleData             Demo CF-MS data
generate_refInt         Generate Class Labels for Data Input Based on
                        Gold Reference Set
getCPX                  Fetch Complexes from the CORUM Database
get_DenoisedNet         Denoising Predicted Protein-Protein
                        Interactions
get_clusters            Predict Complexes
impute_MissingData      Impute missing Values in Elution Profile Matrix
keepMT                  Keep Mitochondrial (mt) Proteins
orthMappingCpx          Protein Complex Ortholog Mapping
predPPI_MACP            Predict Protein-Protein Interactions and
                        Putative Complexes
refcpx                  CORUM reference complexes
scaling                 Column and Row-wise Normalization
subcellular.mtPPI       Keep Mitochondrial (mt) Proteins
