Package: OptM
Title: Estimating the Optimal Number of Migration Edges from 'Treemix'
Version: 0.1.6
Authors@R: person("Robert", "Fitak", email = "rfitak9@gmail.com", role = c("aut", "cre"))
Description: The popular population genetic software 'Treemix' by
    'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967>
    estimates the number of migration edges on a population tree.
    However, it can be difficult to determine the number of migration
    edges to include. Previously, it was customary to stop adding migration
    edges when 99.8% of variation in the data was explained, but 'OptM'
    automates this process using an ad hoc statistic based on the
    second-order rate of change in the log likelihood.  'OptM' also
    has added functionality for various threshold modeling
    to compare with the ad hoc statistic.
Maintainer: Robert Fitak <rfitak9@gmail.com>
Author: Robert Fitak [aut, cre]
Depends: R (>= 3.2.2)
License: GPL (>= 2)
Encoding: UTF-8
NeedsCompilation: no
Imports: SiZer (>= 0.1-4), stats, splines, grDevices, boot (>= 1.3-20)
Date: 2021-9-30
Repository: CRAN
RoxygenNote: 7.1.1.9001
Packaged: 2021-09-30 20:08:32 UTC; rfitak
Date/Publication: 2021-09-30 20:40:05 UTC
Built: R 4.2.0; ; 2022-04-26 00:04:34 UTC; unix
