addCase                 Add observed case(s) to plot.
addDelaunay             Add Delaunay triangles.
addEuclideanPath        Add the path for the Euclidean distance between
                        cases and/or pumps.
addFrame                Add map border to plot.
addIndexCase            Highlight index case at 40 Broad Street.
addKernelDensity        Add 2D kernel density contours.
addLandmarks            Add landmarks to plot.
addMilePosts            Add distance or time based "mileposts" to an
                        observed walking neighborhood plot.
addNeighborhoodCases    Add observed cases by neighborhood.
addNeighborhoodEuclidean
                        Add expected Euclidean pump neighborhoods.
addNeighborhoodWalking
                        Add expected walking neighborhoods.
addPlaguePit            Add plague pit (Marshall Street).
addPump                 Add selected pump(s) to plot.
addRoads                Add all streets and roads to plot.
addSnow                 Adds Snow's graphical annotation of the Broad
                        Street pump walking neighborhood.
addVoronoi              Add Voronoi cells.
addWalkingPath          Add the shortest walking path between a
                        selected cases or pumps.
addWhitehead            Add Rev. Henry Whitehead's Broad Street pump
                        neighborhood.
anchor.case             Anchor or base case of each stack of
                        fatalities.
border                  Numeric IDs of line segments that create the
                        map's border frame.
caseDistance            Compute distance between case fatalities.
caseLocator             Locate case by numerical ID.
cholera-package         cholera: amend, augment and aid analysis of
                        John Snow's cholera map
euclideanPath           Compute path of the Euclidean distance between
                        cases and/or pumps.
fatalities              Amended Dodson and Tobler's cholera data.
fatalities.address      "Unstacked" amended cholera data with address
                        as unit of observation.
fatalities.unstacked    "Unstacked" amended cholera fatalities data
                        with fatality as unit of observation.
fixFatalities           Fix errors in Dodson and Tobler's digitization
                        of Snow's map.
frame.data              Map frame data c("x", "y") and c("lon", "lat").
frame.sample            Partitioned map frame points (segment
                        endpoints).
isoLines                Plot isochrone and isodistance regions
                        (prototype)
landmark.squares        Centers of city squares.
landmarkData            Landmark data.
landmarks               Orthogonal projection of landmarks onto road
                        network.
latlong.ortho.addr      Orthogonal projection of observed address
                        (latlong) cases onto road network.
latlong.ortho.pump      Orthogonal projection of 13 original pumps
                        (latlong).
latlong.ortho.pump.vestry
                        Orthogonal projection of the 14 pumps from the
                        Vestry Report (latlong).
latlongAddress          Compute latitude and longitude of case
                        "addresses" (prototype).
latlongFatalities       Compute latitude and longitude of non-address
                        fatalities (prototype).
latlongLandmarks        Compute Georeferenced Latitude and Longitude
                        (prototype).
latlongNearestPump      Compute shortest georeferenced distances (and
                        walking paths) to selected pumps (prototype).
latlongNeighborhoodData
                        Compute network graph of roads, cases and
                        pumps.
latlongNeighborhoodVoronoi
                        Compute Voronoi pump neighborhoods (lat-long
                        prototype).
latlongNeighborhoodWalking
                        Compute walking path pump neighborhoods.
latlongPumps            Compute Georeferenced Latitude and Longitude
                        (prototype).
latlongRoads            Compute latitude and longitude for unique road
                        segment endpoints (prototype).
latlongVoronoi          Compute Georeferenced Latitude and Longitude of
                        vertices of Voronoi polygons.
latlongWalkingPath      Plot walking path to nearest pump (prototype).
mapRange                Compute xlim and ylim of Snow's map.
nearestPump             Compute shortest distances or paths to selected
                        pumps.
neighborhoodData        Compute network graph of roads, cases and
                        pumps.
neighborhoodEuclidean   Compute Euclidean path pump neighborhoods.
neighborhoodVoronoi     Compute Voronoi pump neighborhoods.
neighborhoodWalking     Compute walking path pump neighborhoods.
ortho.proj              Orthogonal projection of observed cases onto
                        road network.
ortho.proj.pump         Orthogonal projection of 13 original pumps.
ortho.proj.pump.vestry
                        Orthogonal projection of the 14 pumps from the
                        Vestry Report.
oxford.weather          Oxford monthly weather data, January 1853 -
                        December 2019.
oxfordWeather           Weather data recorded in Oxford (Met Office
                        UK).
plague.pit              Plague pit coordinates.
plot.euclidean          Plot method for neighborhoodEuclidean().
plot.euclidean_path     Plot the path of the Euclidean distance between
                        cases and/or pumps.
plot.latlongNeighborhoodVoronoi
                        Plot method for latlongNeighborhoodVoronoi()
plot.latlong_neighborhood_data
                        Plot method for latlongNeighborhoodData().
plot.latlong_walking    Plot method for latlongNeighborhoodWalking().
plot.latlong_walking_path
                        Plot the walking path between selected cases
                        and/or pumps.
plot.neighborhood_data
                        Plot method for neighborhoodData().
plot.oxfordWeather      Plot method for oxfordWeather().
plot.povertyLondon      Plot method for povertyLondon().
plot.profile_perspective
                        Plot method for profilePerspective().
plot.time_series        Plot aggregate time series data from Vestry
                        report.
plot.voronoi            Plot Voronoi neighborhoods.
plot.walking            Plot method for neighborhoodWalking().
plot.walking_path       Plot the walking path between selected cases
                        and/or pumps.
plot.winterTemperatures
                        Plot method for winterTemperatures().
povertyLondon           Poverty and Born in London.
print.euclidean         Print method for neighborhoodEuclidean().
print.euclidean_path    Print method for euclideanPath().
print.iso               Print method for isoVertices().
print.latlongNeighborhoodVoronoi
                        Print method for latlongNeighborhoodVoronoi().
print.latlong_walking_path
                        Print method for latlongWalkingPath().
print.time_series       Print summary data for timeSeries().
print.voronoi           Print method for neighborhoodVoronoi().
print.walking           Print method for neighborhoodWalking().
print.walking_path      Print method for walkingPath().
profile2D               2D Profile .
profile3D               3D Profile.
pumpCase                Extract numeric case IDs by pump neighborhood.
pumpData                Compute pump coordinates.
pumpFatalities          Compute fatalities by pump.
pumpLocator             Locate water pump by numerical ID.
pumps                   Dodson and Tobler's pump data with street name.
pumps.vestry            Vestry report pump data.
rd.sample               Sample of road intersections (segment
                        endpoints).
rectangle.filter        Rectangular filter data.
regular.cases           "Expected" cases.
road.segments           Dodson and Tobler's street data transformed
                        into road segments.
roadSegmentFix          Bar orientation classification errors.
roadSegments            Reshape 'roads' data frame into 'road.segments'
                        data frame.
roads                   Dodson and Tobler's street data with appended
                        road names.
segmentHighlight        Highlight segment by ID.
segmentLength           Compute length of road segment.
segmentLocator          Locate road segment by ID.
sim.ortho.proj          Road "address" of simulated (i.e., "expected")
                        cases.
sim.pump.case           List of "simulated" fatalities grouped by
                        walking-distance pump neighborhood.
sim.walking.distance    Walking distance to Broad Street Pump (#7).
simulateFatalities      Generate simulated fatalities.
simulateWalkingDistance
                        Compute walking distance for simulated cases.
snow.neighborhood       Snow neighborhood fatalities.
snowColors              Create a set of colors for pump neighborhoods.
snowMap                 Plot John Snow's cholera map.
snowNeighborhood        Plotting data for Snow's graphical annotation
                        of the Broad Street pump neighborhood.
streetHighlight         Highlight road by name.
streetLength            Compute length of selected street.
streetNameLocator       Locate road by name.
streetNames             Street names (alphabetized).
streetNumberLocator     Locate road by numerical ID.
subsetRoadsSamples      Sample for road segment endpoints.
summary.euclidean       Summary method for neighborhoodEuclidean().
summary.voronoi         Summary method for neighborhoodVoronoi().
summary.walking         Summary method for neighborhoodWalking().
timeSeries              Aggregate time series fatality data from the
                        Vestry report.
unitMeter               Convert nominal map distance to meters or
                        yards.
unstackFatalities       Unstack "stacks" in Snow's cholera map.
voronoi.polygons        Coordinates of Voronoi polygon vertices for
                        original map.
voronoi.polygons.vestry
                        Coordinates of Voronoi polygon vertices for
                        Vestry Report map.
voronoiPolygons         Extract vertices of Delaunay triangles and
                        Dirichelet (Voronoi) tiles.
walkingPath             Compute the shortest walking path between cases
                        and/or pumps.
winterTemperatures      Average Winter Temperatures.
