ExogenousForcing        Modify parameters due to exogenous forcing
ExogenousForcing.null   Modify parameters due to exogenous forcing
F_EIR                   Entomological inoculation rate on human strata
F_EIR.SIP               Entomological inoculation rate on human strata
F_EIR.SIS               Entomological inoculation rate on human strata
F_EIR.hMoI              Entomological inoculation rate on human strata
F_Z                     Density of infectious mosquitoes
F_Z.RM                  Density of infectious mosquitoes
F_Z_lag                 Density of lagged infectious mosquitoes
F_Z_lag.RM              Density of lagged infectious mosquitoes
F_alpha                 Number of newly emerging adults from each
                        larval habitat
F_alpha.basic           Number of newly emerging adults from each
                        larval habitat
F_alpha.trace           Number of newly emerging adults from each
                        larval habitat
F_beta                  Biting distribution matrix
F_beta.SIP              Biting distribution matrix
F_beta.SIS              Biting distribution matrix
F_beta.hMoI             Biting distribution matrix
F_beta_lag              Lagged biting distribution matrix
F_beta_lag.SIP          Lagged biting distribution matrix
F_beta_lag.SIS          Lagged biting distribution matrix
F_beta_lag.hMoI         Lagged biting distribution matrix
F_eggs                  Number of eggs laid by adult mosquitoes
F_eggs.RM               Number of eggs laid by adult mosquitoes
F_kappa                 Net infectiousness of human population to
                        mosquitoes
F_kappa.RM_dde          Net infectiousness of human population to
                        mosquitoes
F_kappa.RM_ode          Net infectiousness of human population to
                        mosquitoes
F_tau                   Time spent host seeking/feeding and
                        resting/ovipositing
F_tau.RM                Time spent host seeking/feeding and
                        resting/ovipositing
F_x                     Size of effective infectious human population
F_x.SIP                 Size of effective infectious human population
F_x.SIS                 Size of effective infectious human population
F_x.hMoI                Size of effective infectious human population
F_x_lag                 Size of lagged effective infectious human
                        population
F_x_lag.SIP             Size of lagged effective infectious human
                        population
F_x_lag.SIS             Size of lagged effective infectious human
                        population
F_x_lag.hMoI            Size of lagged effective infectious human
                        population
MosquitoBehavior        Compute bloodfeeding and mortality rates
MosquitoBehavior.RM     Compute bloodfeeding and mortality rates
VectorControl           Modify baseline values due to vector control
VectorControl.lemenach
                        Modify baseline values due to vector control
VectorControl.null      Modify baseline values due to vector control
approx_equal            Check if two numeric values are approximately
                        equal
dLdt                    Derivatives for aquatic stage mosquitoes
dLdt.basic              Derivatives for aquatic stage mosquitoes
dLdt.trace              Derivatives for aquatic stage mosquitoes
dMYZdt                  Derivatives for adult mosquitoes
dMYZdt.RM_dde           Derivatives for adult mosquitoes
dMYZdt.RM_ode           Derivatives for adult mosquitoes
dXdt                    Derivatives for human population
dXdt.SIP                Derivatives for human population
dXdt.SIS                Derivatives for human population
dXdt.hMoI               Derivatives for human population
diag_inverse            Invert a diagonal matrix
make_Omega              Make the mosquito demography matrix
make_index_L            Add indices for aquatic stage mosquitoes to
                        parameter list
make_index_L.basic      Add indices for aquatic stage mosquitoes to
                        parameter list
make_index_L.trace      Add indices for aquatic stage mosquitoes to
                        parameter list
make_index_MYZ          Add indices for adult mosquitoes to parameter
                        list
make_index_MYZ.RM       Add indices for adult mosquitoes to parameter
                        list
make_index_X            Add indices for human population to parameter
                        list
make_index_X.SIP        Add indices for human population to parameter
                        list
make_index_X.SIS        Add indices for human population to parameter
                        list
make_index_X.hMoI       Add indices for human population to parameter
                        list
make_indices            Set indices for generalized spatial model
make_parameters_L_basic
                        Make parameters for basic competition aquatic
                        mosquito model
make_parameters_L_trace
                        Make parameters for trace aquatic mosquito
                        model
make_parameters_MYZ_RM_dde
                        Make parameters for generalized RM DDE adult
                        mosquito model
make_parameters_MYZ_RM_ode
                        Make parameters for generalized RM ODE adult
                        mosquito model
make_parameters_X_SIP   Make parameters for SIP human model
make_parameters_X_SIS   Make parameters for SIS human model
make_parameters_X_hMoI
                        Make parameters for hybrid MoI human model
make_parameters_exogenous_null
                        Make parameters for the null model of exogenous
                        forcing (do nothing)
make_parameters_vc_lemenach
                        Make parameters for Le Menach ITN model of
                        vector control
make_parameters_vc_null
                        Make parameters for the null model of vector
                        control (do nothing)
metric_calD             Parasite dispersal by humans
metric_calR             Parasite Dispersal through one Parasite
                        Generation (Humans)
metric_calV             Parasite dispersal by mosquitoes
metric_calZ             Parasite Dispersal through one Parasite
                        Generation (Mosquitoes)
xDE_diffeqn             Generalized spatial differential equation model
xDE_diffeqn_mosy        Generalized spatial differential equation model
                        (mosquito only)
