CLIP.confint            Confidence Intervals after Multiple Imputation:
                        Combination of Likelihood Profiles
CLIP.confint.difflevel
                        Combine confidence interval for 'logistf' after
                        multiple imputation
CLIP.profile            Combine Profile Likelihoods from Imputed-Data
                        Model Fits
PVR.confint             Pseudo Variance Modification of Rubin's Rule
add1.logistf            Add or Drop All Possible Single Terms to/from a
                        'logistf' Model
anifood                 case-control data
anova.logistf           Analysis of Penalized Deviance for 'logistf'
                        Models
backward                Backward Elimination/Forward Selection of Model
                        Terms in logistf Models
cacheit                 Function to cache long operations
calc_strata_or          Calculate the pooled strata OR
distance_density_plot   Distance density plots comparing closest to
                        random choices
excl_vars               Variables excluded from matching
finalize_data           Final cleaning of the matched dataset(s)
fix_df                  Fix the strata so they all have at least one
                        case and control
flac                    FLAC - Firth's logistic regression with added
                        covariate
flic                    FLIC - Firth's logistic regression with
                        intercept correction
get_paf                 Calculate population attributable fraction
                        using odds ratio
get_threshold           Identify the right threshold
isspecnum               Is specnum
logistf                 Firth's Bias-Reduced Logistic Regression
logistf-package         Firth's Bias-Reduced Logistic Regression
logistf.control         Control Parameters for 'logistf'
logistf.fit             Fit a Firth logistic regression model
logistf.pdf             Likehood-ratio test of two models
logistftest             Penalized likelihood ratio test
logistpl.control        Default logistpl control
make_analysis_set       Make analysis set
make_analysis_sets      Make analysis datasets
make_knn_strata         Make case-control strata using k nearest
                        neighbors (knn)
nncc                    nncc: nearest-neighbors matching for
                        case-control data
original_compare_plot   Compare the original strata's distances to the
                        knn version
plot.logistf.profile    'plot' Method for 'logistf' Likelihood Profiles
plot_results            Plot the OR results
predict.flac            Predict Method for flac Fits
predict.flic            Predict Method for flic Fits
predict.logistf         Predict Method for logistf Fits
profile.logistf         Compute Profile Penalized Likelihood
sex2                    Urinary Tract Infection in American College
                        Students
sexagg                  Urinary Tract Infection in American College
                        Students
test_mh                 Calculate odds ratios
threshold_model_plot    Show the prediction of the logistic regression
                        model
unique_controls         Ensures controls are unique to avoid possible
                        pseudoreplication issues
write_strata_or_output
                        Format strata output into CSV
