epiworldR-package	epiworldR-package
actions	global-events
add_entities_from_dataframe	add_entities_from_dataframe
add_entity	entities
add_globalevent	global-events
add_param	epiworld-methods
add_param.epiworld_model	epiworld-methods
add_tool	tool
add_tool_agent	agents_smallworld
add_tool_n	epiworldR-deprecated
add_virus	virus
add_virus_agent	agents_smallworld
add_virus_n	epiworldR-deprecated
agents	agents
agents_from_edgelist	agents_smallworld
agents_smallworld	agents_smallworld
as.array.epiworld_hist_transition	epiworld-transition
change_state	agents_smallworld
clone_model	epiworld-methods
distribute_entity_randomly	entities
distribute_entity_to_set	entities
distribute_tool_randomly	tool
distribute_tool_to_entities	tool
distribute_tool_to_set	tool
distribute_virus_randomly	virus
distribute_virus_set	virus
distribute_virus_to_entities	virus
distribute_virus_to_set	virus
draw_mermaid	epiworld-methods
draw_mermaid_from_data	epiworld-model-diagram
draw_mermaid_from_file	epiworld-model-diagram
draw_mermaid_from_files	epiworld-model-diagram
draw_mermaid_from_matrix	epiworld-model-diagram
entities	entities
entity	entities
entity_add_agent	entities
entity_get_agents	entities
epiworld-gentime	epiworld-gentime
epiworld-history	epiworld-history
epiworld-hospitalizations	epiworld-hospitalizations
epiworld-methods	epiworld-methods
epiworld-model-diagram	epiworld-model-diagram
epiworld-repnum	epiworld-repnum
epiworld-summaries	epiworld-summaries
epiworld-transition	epiworld-transition
epiworld-transmissions	epiworld-transmissions
epiworldR	epiworldR-package
epiworldR-deprecated	epiworldR-deprecated
epiworld_agent	agents
epiworld_agents	agents
epiworld_diffnet	ModelDiffNet
epiworld_generation_time	epiworld-gentime
epiworld_globalevent	global-events
epiworld_globalevent_set_param	global-events
epiworld_globalevent_tool	global-events
epiworld_globalevent_tool_logit	global-events
epiworld_hist_tool	epiworld-history
epiworld_hist_total	epiworld-history
epiworld_hist_transition	epiworld-transition
epiworld_hist_virus	epiworld-history
epiworld_lfmcmc	LFMCMC
epiworld_model	epiworld-methods
epiworld_repnum	epiworld-repnum
epiworld_saver	run_multiple
epiworld_seir	ModelSEIR
epiworld_seirconn	ModelSEIRCONN
epiworld_seird	ModelSEIRD
epiworld_seirdconn	ModelSEIRDCONN
epiworld_seirmixing	ModelSEIRMixing
epiworld_seirmixingquarantine	ModelSEIRMixingQuarantine
epiworld_sir	ModelSIR
epiworld_sirconn	ModelSIRCONN
epiworld_sird	ModelSIRD
epiworld_sirdconn	ModelSIRDCONN
epiworld_sirmixing	ModelSIRMixing
epiworld_sis	ModelSIS
epiworld_sisd	ModelSISD
epiworld_surv	ModelSURV
epiworld_tool	tool
epiworld_virus	virus
get_active_cases	epiworld-summaries
get_agents	agents
get_agents.epiworld_model	agents
get_agents_data_ncols	epiworld-methods
get_agents_states	agents_smallworld
get_agents_tools	agents_smallworld
get_all_accepted_kernel_scores	LFMCMC
get_all_accepted_params	LFMCMC
get_all_accepted_stats	LFMCMC
get_all_sample_acceptance	LFMCMC
get_all_sample_drawn_prob	LFMCMC
get_all_sample_kernel_scores	LFMCMC
get_all_sample_params	LFMCMC
get_all_sample_stats	LFMCMC
get_current_accepted_params	LFMCMC
get_current_accepted_stats	LFMCMC
get_current_proposed_params	LFMCMC
get_current_proposed_stats	LFMCMC
get_entities	entities
get_entity_name	entities
get_entity_size	entities
get_generation_time	epiworld-gentime
get_hist_tool	epiworld-history
get_hist_total	epiworld-history
get_hist_transition_matrix	epiworld-transition
get_hist_virus	epiworld-history
get_hospitalizations	epiworld-hospitalizations
get_initial_params	LFMCMC
get_mean_params	LFMCMC
get_mean_stats	LFMCMC
get_name	epiworld-methods
get_name_tool	tool
get_name_virus	virus
get_ndays	epiworld-methods
get_network	agents_smallworld
get_n_params	LFMCMC
get_n_replicates	epiworld-methods
get_n_samples	LFMCMC
get_n_stats	LFMCMC
get_n_tools	epiworld-methods
get_n_viruses	epiworld-methods
get_observed_stats	LFMCMC
get_outbreak_size	epiworld-summaries
get_param	epiworld-methods
get_reproductive_number	epiworld-repnum
get_state	agents
get_states	epiworld-methods
get_today_total	epiworld-history
get_tool	epiworld-methods
get_transition_probability	epiworld-summaries
get_transmissions	epiworld-transmissions
get_virus	epiworld-methods
global-actions	global-events
global-events	global-events
globalaction_fun	epiworldR-deprecated
globalaction_set_params	epiworldR-deprecated
globalaction_tool	epiworldR-deprecated
globalaction_tool_logit	epiworldR-deprecated
globalevent_fun	global-events
globalevent_set_params	global-events
globalevent_tool	global-events
globalevent_tool_logit	global-events
has_tool	agents_smallworld
has_virus	agents_smallworld
initial_states	epiworld-methods
LFMCMC	LFMCMC
load_agents_entities_ties	entities
make_saver	run_multiple
ModelDiffNet	ModelDiffNet
ModelMeaslesMixing	epiworldR-deprecated
ModelMeaslesMixingRiskQuarantine	epiworldR-deprecated
ModelMeaslesQuarantine	epiworldR-deprecated
ModelMeaslesSchool	epiworldR-deprecated
ModelSEIR	ModelSEIR
ModelSEIRCONN	ModelSEIRCONN
ModelSEIRD	ModelSEIRD
ModelSEIRDCONN	ModelSEIRDCONN
ModelSEIRMixing	ModelSEIRMixing
ModelSEIRMixingQuarantine	ModelSEIRMixingQuarantine
ModelSIR	ModelSIR
ModelSIRCONN	ModelSIRCONN
ModelSIRD	ModelSIRD
ModelSIRDCONN	ModelSIRDCONN
ModelSIRLogit	ModelSIRLogit
ModelSIRMixing	ModelSIRMixing
ModelSIS	ModelSIS
ModelSISD	ModelSISD
ModelSURV	ModelSURV
network	agents_smallworld
plot.epiworld_diagram	epiworld-model-diagram
plot.epiworld_generation_time	epiworld-gentime
plot.epiworld_hist	epiworld-history
plot.epiworld_hist_transition	epiworld-transition
plot.epiworld_repnum	epiworld-repnum
plot_generation_time	epiworld-gentime
plot_incidence	epiworld-transition
plot_reproductive_number	epiworld-repnum
print.epiworld_agent	agents
print.epiworld_agents	agents
print.epiworld_agents_tools	tool
print.epiworld_diagram	epiworld-model-diagram
print.epiworld_lfmcmc	LFMCMC
queuing_off	epiworld-methods
queuing_on	epiworld-methods
rm_entity	entities
rm_globalevent	global-events
rm_tool	tool
rm_virus	virus
run	epiworld-methods
run_lfmcmc	LFMCMC
run_multiple	run_multiple
run_multiple_get_results	run_multiple
set_agents_data	epiworld-methods
set_death_reduction	tool
set_death_reduction_fun	tool
set_death_reduction_ptr	tool
set_distribution_entity	entities
set_distribution_tool	tool
set_distribution_virus	virus
set_incubation	virus
set_incubation_fun	virus
set_incubation_ptr	virus
set_kernel_fun	LFMCMC
set_name	epiworld-methods
set_name_tool	tool
set_name_virus	virus
set_observed_data	LFMCMC
set_param	epiworld-methods
set_params_names	LFMCMC
set_prob_death	virus
set_prob_death_fun	virus
set_prob_death_ptr	virus
set_prob_infecting	virus
set_prob_infecting_fun	virus
set_prob_infecting_ptr	virus
set_prob_recovery	virus
set_prob_recovery_fun	virus
set_prob_recovery_ptr	virus
set_proposal_fun	LFMCMC
set_recovery_enhancer	tool
set_recovery_enhancer_fun	tool
set_recovery_enhancer_ptr	tool
set_simulation_fun	LFMCMC
set_stats_names	LFMCMC
set_summary_fun	LFMCMC
set_susceptibility_reduction	tool
set_susceptibility_reduction_fun	tool
set_susceptibility_reduction_ptr	tool
set_transmission_reduction	tool
set_transmission_reduction_fun	tool
set_transmission_reduction_ptr	tool
size	epiworld-methods
summary.epiworld_model	epiworld-methods
today	epiworld-methods
tool	tool
tool_fun_logit	tool
use_kernel_fun_gaussian	LFMCMC
use_proposal_norm_reflective	LFMCMC
verbose_off	epiworld-methods
verbose_off.epiworld_lfmcmc	LFMCMC
verbose_on	epiworld-methods
virus	virus
virus_fun_logit	virus
virus_set_state	virus
[.epiworld_agents	agents
[.epiworld_entities	entities
