Biotic Ligand Model Engine

---

Documentation for package ‘BLMEngineInR’ version 0.1.7

• DESCRIPTION file.
• Package NEWS.

Help Pages

AddComponents	Add or remove components in the problem
AddCriticalValues	Edit Critical Values Table
AddDefComps	Add or remove components in the problem
AddInComps	Add or remove components in the problem
AddInLabs	Add or remove input labels in a problem
AddInVars	Add or remove a input variables in a problem
AddMassCompartments	Add or remove mass compartments in a problem
AddPhases	Add or remove phase reactions in a problem
AddSpecialDefs	Add or remove species definitions
AddSpecies	Add or remove a species reactions in a problem
All_NIST20170203_reactions	All NIST_20170203.dbs reactions
All_WATER23_reactions	All WATER23.dbs reactions
BlankProblem	Make a blank input problem list object
BlankWHAM	Make a blank WHAM parameter list object
BLM	Run the Biotic Ligand Model
carbonate_system_problem	Carbonate system problem
CheckBLMObject	Check an object for use in the BLMEngineInR package
CHESS	CHemical Equilibria in Soils and Solutions
CommonParameterDefinitions	Common Parameter Definitions
Components	Add or remove components in the problem
ConvertWHAMVThermoFile	Convert from a WHAM V thermodynamic database file
ConvertWindowsParamFile	Convert From a Windows BLM Parameter File
CriticalValues	Edit Critical Values Table
Cu_full_inorganic_problem	Cu problem with only inorganic components
Cu_full_organic_problem	Copper problem with WHAM V organic matter
DefineProblem	Define the speciation problem
DefineWHAM	Read a WHAM file and make a WHAM list
GetData	Get data from the input file
InLabs	Add or remove input labels in a problem
InVars	Add or remove a input variables in a problem
ListCAT	List Critical Accumulation Table
MassCompartments	Add or remove mass compartments in a problem
MatchInputsToProblem	Match Inputs to Problem
MW	Molecular and atomic weights
Ni_full_organic_problem	Ni problem with WHAM V organic matter
Ni_HCO3_full_organic_problem	Ni problem with WHAM V organic matter and NiHCO3 toxic
Phases	Add or remove phase reactions in a problem
ReadInputsFromFile	Read a BLM Input File
RemoveComponents	Add or remove components in the problem
RemoveCriticalValues	Edit Critical Values Table
RemoveDefComps	Add or remove components in the problem
RemoveInComps	Add or remove components in the problem
RemoveInLabs	Add or remove input labels in a problem
RemoveInVars	Add or remove a input variables in a problem
RemoveMassCompartments	Add or remove mass compartments in a problem
RemovePhases	Add or remove phase reactions in a problem
RemoveSpecialDefs	Add or remove species definitions
RemoveSpecies	Add or remove a species reactions in a problem
SpecialDefs	Add or remove species definitions
Species	Add or remove a species reactions in a problem
water_MC_problem	Water mass compartment only problem
water_problem	Water-only problem
WriteDetailedFile	Write a VERY Detailed Output File
WriteInputFile	Write a BLM input file
WriteParamFile	Write a BLM Parameter File
WriteWHAMFile	Write a WHAM Parameter File