8484fb2a588e22822b2aade67a7ac0d8 *DESCRIPTION
1595895814fd11c1d8f7fe2272e840d9 *NAMESPACE
f52ab5ed8b0d48a819679c0a9dc6e3f4 *NEWS.md
901194984868e33d1cdc15c66f38fb6b *R/AlleleTrim.R
a728db153543b7ad235507555b1e20b8 *R/BDstrat.R
c6a9c9b9a8d5f3725b589e1b8c30f9e8 *R/BDtoPyPop.R
92a52794017869a92cff279f21bc7845 *R/BuildAlleleListHistory.R
7d0ac32a3345d04c401aab0a1302e623 *R/GIANT.R
e8f79194f2b835d4fe9ce58065a7b24b *R/GLStoUNI.R
4bc2ea42bf8588bfca97be2d6e8d5606 *R/GLupdater.R
0a96dd0198de99c706dd80a6963623c1 *R/SearchandBuildAlignments.R
94f2d6172b6e52d5d21e807baefd9979 *R/ThirdPartyFunctions.R
dbb7f8c51926e6866d3868fbd4053238 *R/UNItoGLS.R
7aca48fc29d8c42f195328a80080e82b *R/UpdateAll.R
e9ca0e1559cc8c3e67e21cf4328f0afc *R/VersionValidation.R
c2a8821a0ebc12dc9af56cf592044e46 *R/accessoryFunctions.R
6ad8fbf70034cc0993e4a27ce10d4a9f *R/alignmentFull.R
11e076e9c4a37708f77733327afd07db *R/atlasFull.R
dfa97ec42e03631c2c8139752831e2ae *R/atlasMaker.R
8355d6262247af6c4b513a6216e26633 *R/buildAlignments.R
26145d4b57af05208fc8c0a854ede804 *R/buildGazeteer.R
848fb20ad1ce4609cce6d41d10974340 *R/checkgDNAStart.R
aae0cb16572299a6b483574b70b6149f *R/compareSequences.R
a38ecd4dcdbd6d183fd840768aa2b8da *R/data.R
7b22d0382a212e186dacd687ba1807ff *R/extractGeneTypes.R
1e57ab93eafa8adcaf73fa461b718738 *R/fragmentFeatureNames.R
96d415f042effa66157437f0fd968770 *R/globals.R
7dda8a33a8e6ec8f12220e9529318d96 *R/locusValidator.R
2e98f685e435982135dec13d2a9d723a *R/motifMatch.R
1f3efc7f36a159547051db61ce7aba97 *R/relRisk.R
167d3a7c1f1e316fc7d7336cb574e3c0 *README.md
bb40e4a7f51d7d998a028a168cbff693 *build/vignette.rds
a834177cb749c67c97e88dde5d6bd795 *data/GLSC.ex.rda
b3334e3e37cf0a7422bff943b93268f8 *data/GLstring.ex.rda
76f500ba0b8d12dd4c160d358c33a19a *data/HLAatlas.rda
a6132e40769686579107c52113b169c5 *data/HLAgazeteer.rda
7dd10d03ea3a995886341c8067e8cc3d *data/IMGTHLAGeneTypes.rda
0b4ddd41998fb79b4d8f867cd5a7d06e *data/UNIFORMAT.example.rda
0148497ccab85d5981c3924cf4f8a7ef *data/alleleListHistory.rda
5ebdbb0a6a5b27b4f98f49e6f6e998d2 *data/fragmentFeatureNames.rda
143efdb1dc0d7306a0849011fa1aa09c *data/sHLAdata.rda
be11c7cdb124391436c954f8edd83ee4 *inst/doc/HLAtools.R
a664622b9e8717dc6274b85890f1871e *inst/doc/HLAtools.Rmd
b8fabfb49d13c06817a1169707ff3212 *inst/doc/HLAtools.html
d5ed72e117a4f5ad69023daec6f6f85d *man/BDstrat.Rd
de16b9ba9f380b7386b408c6346d49e2 *man/BDtoPyPop.Rd
688edd1b815c98915f51f29d3c37a9d5 *man/GIANT.Rd
2bf662236cc50431cf6d8ff12cdf9f2f *man/GLSC.ex.Rd
a1b3a82ddc52a9f7bf3caabab8a5f3a2 *man/GLStoUNI.Rd
ac2d909d4ef3d6d15ac7d42008e5b19c *man/GLV.Rd
8c83caa60f973b003c82fa0f3c6a55aa *man/GLV2.Rd
d8ab826f1d6cfbbbcc60b1a0b7d6fae2 *man/GLVhelper.Rd
2695cdd7da22377145e7bf1a5cedbf26 *man/GLstring.ex.Rd
a36e0ef29c6ed704bc7de384572d8473 *man/GLtoUN.Rd
692e3b33aab444678b9fdc22d08ee1df *man/GLupdate.Rd
80d24c3f6bef6ac89a02452ad74342c0 *man/GLvalidate.Rd
60393341df241809c152b0b31208b201 *man/HLAatlas.Rd
f7a489c3300d3e631e759e113c809efe *man/HLAgazeteer.Rd
f862324acb820d2f76037053e627b66c *man/IMGTHLAGeneTypes.Rd
f21813133830fb6c74680b87974a8e74 *man/UNIFORMAT.example.Rd
8ed4014c9560ce54a86c6d6ed2028e63 *man/UNItoGLS.Rd
b242556fadbd6ad11a847bac6aeb5608 *man/UNtoGL.Rd
bb20ceb7e8024b3227ce9e16d3067220 *man/addCodonLine.Rd
cb912a8b02542a0e2a2dd7b362e4e544 *man/alignmentFull.Rd
c42b958635b054c1bb8a9ee3c7bf2ed8 *man/alignmentSearch.Rd
c5ba9782a015031bb1b933b61a21c497 *man/alleleListHistory.Rd
2d37d2683a2636c7b214714a8b927c4e *man/alleleTrim.Rd
74fab9faae8ff803186127bb468ec350 *man/atlasFull.Rd
b2dc566ea689e0a651928b6263c72f16 *man/atlasMaker.Rd
9d6173947ba0717e31c77a8133c859b6 *man/buildAlignments.Rd
dcf2cd1d02a394ac222506b2daf7f007 *man/buildGazeteer.Rd
8b490dc7b043c71eaf99e2784699454b *man/buildIMGTHLAGeneTypes.Rd
8d3557af79e05a5e696dc00da6544871 *man/checkAlignType.Rd
4cb50285c5dfe48471768669f26e0e8a *man/checkSource.Rd
21e6d80378c54fc6a3b5cc6162cb51cb *man/checkVersion.Rd
ab328484ce60c9fb51f9831f966c5faf *man/checkgDNAstart.Rd
cf9f816b0ad375874be46531ef21f538 *man/compareSequences.Rd
55cd38a3988dfa538fae6a4f01971e1c *man/convertAny.Rd
9ea7719d7cfaefdb011eb0468d3bcc80 *man/countSpaces.Rd
c1c9457ce85e2b1e8829e2b9d1c52390 *man/customAlign.Rd
14e32623092fc8503188ebf5ba9f8fdd *man/expandVersion.Rd
0bbdfbca9d489fbb8292a6dbf7042b92 *man/ffN.Rd
804614ffd49c39de869a7e149eb7ae3f *man/formatHead.Rd
76ab8b049638749878350be5d9150ad8 *man/fragmentFeatureNames.Rd
eb6722b0ffd65dd5ab7adad6a90512e8 *man/getAlignmentNames.Rd
07864561e3ae8d0fdbe96e41115385c5 *man/getField.Rd
3cb19bd02735406462e0b741f21391a9 *man/getLatestVersion.Rd
5a72744a603cecfb08e2379092c6bb12 *man/motifMatch.Rd
4f7c34b32964fa9859b0dab114a70649 *man/multiAlign.Rd
346b80d2da26416b73e0d7309a6fcecf *man/multiGLStoUNI.Rd
c12231d56b1d44a022283766d8b6de6f *man/multiLocusValidation.Rd
beefa086889d41e26fe2091157a93795 *man/multiSearch.Rd
f64bfe0ead678aae31d4ad0d075de683 *man/multiUNItoGLS.Rd
03bdac9ba28650dd780fe29e2084a9f9 *man/multiUpdateGL.Rd
5885e7af6201ee78a4ffc125a76ec161 *man/numFields.Rd
c3eb4e2e541137f220bfa893a4da3541 *man/parseAlignmentHead.Rd
a1621d1a24a04bb72ed32573a6bb5933 *man/posSort.Rd
bb8cc3c4ebf4f49ce49bc8ce3c73b302 *man/pypopHeaders.Rd
012877f7629182c92a84fb5acfea3557 *man/queryRelease.Rd
bfce764c6227f981dedce8dc4e75a8ba *man/redec.Rd
1d79b2510e2d870a4bd402f1d29b884f *man/relRisk.Rd
4807748a833ac44845eb4f2438cf0986 *man/repoVersion.Rd
1d4cdece918816f374c361900ee8524b *man/sHLAdata.Rd
e2185562a3ee63198c3cde30c5dd8d1b *man/squashVersion.Rd
2844055b2b578c0d765425e14056d89e *man/typeToSource.Rd
9430f609a8fa42211fe6a3862e09b14b *man/uniAlign.Rd
8c46f35549720b49cb0d7953e846456f *man/uniSearch.Rd
9630e59e0aff5c9f171464d9a0ed98da *man/updateAll.Rd
9b758bc621fe9a98c8c65e130617242d *man/updateAlleleListHistory.Rd
49dfec773e9ab8e97ceefe2ae5697566 *man/updateGL.Rd
fb4f5834313ac2a2f2ddaa2e336f7660 *man/validateAllele.Rd
2e2bec1f8da1679af6f292f607d2fa1b *man/validateGLstring.Rd
dcc8f3357ceaea5b68f3bf6db59c0476 *man/validateLocus.Rd
8ffa6a67b887a92aa0a7be6c7c3f1cd2 *man/validateMotif.Rd
2cd390213bf65fa0ff8af0ac25c56419 *man/validateUniformat.Rd
e7ed97218d5649d64b7e61151639a8f4 *man/validateVersion.Rd
7e371fc91b14924fd312256d37efc5e8 *man/verifyAllele.Rd
a664622b9e8717dc6274b85890f1871e *vignettes/HLAtools.Rmd
