64e931d747a6332d6a5836596f8492b3 *DESCRIPTION
bc2c383d1c5cd3a9681844b219604314 *NAMESPACE
7fdc45f7e26b112b8576526040a0b1f0 *R/ABC_SMC.R
6899fa96340d2e4789367f84d67e4c3b *R/check_phylogenies.R
fca9c0333f1d77058d5fe5f77c7433f7 *R/check_step_type.R
bb861b96fd582abc50b7b831a12b913c *R/check_time_unit.R
7a8e1f901366663ba84b42bbd98f81af *R/default_params_doc.R
39837f0183675768c5daf4db584ee0c2 *R/get_average_nltt_matrix.R
fc45e27195bbcdb5ffd0ee51f22ba2d1 *R/get_branching_times.R
36b035e039bc974cd2d98ee809ef8dc0 *R/get_n_lineages.R
48c7316b6a56051e68fe77bb84c7bc0e *R/get_nltt_values.R
76fb9a2371e0eae6ad80a54dfab7886a *R/get_norm_brts.R
218fb8efab66c43ef4162ea95e16b1a1 *R/get_norm_n.R
3b4a4c10b5543d4654a83ee1e4097528 *R/get_phylogeny_nltt_matrix.R
05a75d3643e800cdd52af8683afc22e7 *R/nLTTDiff.R
5e0018a84413d06f43ae72c6651168fe *R/nltt_diff_exact_extinct.R
6b04069e0c75cbae5493f221a589b164 *R/nltts_plot.R
cc4f9835095ed4b3460826c480a72126 *R/plot_nLTT.R
1bf036a627fbab322e18e2cfa2ce9b8c *R/stretch_nltt_matrix.R
27e80c2c218591b95a2dbf5119b1743a *build/vignette.rds
a682e93715d8266c234a7e2b3410a43d *data/exampleTrees.rda
d6ee1fc5d11c6e510f48318db97fc9ec *inst/doc/get_nltt_values.R
3506560f591c8039e5c1e76d504f96d2 *inst/doc/get_nltt_values.Rmd
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899b1ac24688bdafca8c0387d9a4038a *inst/doc/nltts_plot.html
afff1bb142348aacca8802fb8f032f22 *inst/doc/stretch_nltt_matrix.R
650f9716d1cd0d6518a8494e30dc9492 *inst/doc/stretch_nltt_matrix.Rmd
258e0383547c557d9f28f182236a6fd5 *inst/doc/stretch_nltt_matrix.html
35fb4948cc7fc0b3437992667237ec3c *inst/doc/trees_with_root_edge.R
068430379ec0d84e33bf712fb062034f *inst/doc/trees_with_root_edge.Rmd
6815de0d295dad8fa8db8f462b766b4f *inst/doc/trees_with_root_edge.html
8a0cb8430a50844dd9ad9cfdb7808350 *inst/doc/walkthrough.R
7b31f17e6e07c0601d544947432f2a01 *inst/doc/walkthrough.Rmd
1df28a15645531adbd740e8d75769665 *inst/doc/walkthrough.html
9a95521c441584d3c1ad004ff8fa66d8 *inst/extdata/issue_38.RDa
b7857962b6bf380b6d19a6e9cd5dc9d1 *man/abc_smc_nltt.Rd
cc976ecdb962e503b3cdcf20a5a2b0a3 *man/check_input_event_times.Rd
d06a5b3d0aa592eaa5ac60cb3cffc726 *man/check_phylogenies.Rd
4f9268ce24b01857daa5adfd703e5d93 *man/check_step_type.Rd
449da3fb80559de8c53ce4013bac3837 *man/check_time_unit.Rd
6b7d3e7f1cde8ce47010d453fad2e00c *man/default_params_doc.Rd
2ff4a8e406d65787b8375ad6259e096e *man/exampleTrees.Rd
1026d37d62d4a048d9710de920eafd15 *man/get_average_nltt_matrix.Rd
744cfc3e7d9f0bfcaf4c0e38db7c7750 *man/get_branching_times.Rd
0f3a137db6ffc60f2e34b13c16b50cbf *man/get_n_lineages.Rd
492f0b722a34ce54102195a3c5eaf453 *man/get_nltt_values.Rd
b1ec7ff4e486f641f199896b79b23799 *man/get_norm_brts.Rd
d8ce8815341ef97ccdd7e3af740f14ac *man/get_norm_n.Rd
6290cb0564936f7257ca1a381d02a23c *man/get_phylogeny_nltt_matrix.Rd
a9f98e93c2113306f0395059414347a3 *man/mcmc_nltt.Rd
489325c7b8d98907d466517043db159a *man/nLTT-internal.Rd
3d04df782da3d5eee1a2d6cb1925b639 *man/nLTT-package.Rd
6d802174c448647f2d2f8b579da663d4 *man/nLTTstat.Rd
59f3ea47427f4622926e3063f1178bba *man/nLTTstat_exact.Rd
934a0af34acd70413473e0e9195c2e99 *man/nltt_diff.Rd
0112c6a675fdc94d18345c55834ad375 *man/nltt_diff_exact.Rd
994c8bf4ef195ae7857952cfb3b6f380 *man/nltt_diff_exact_brts.Rd
cbad477635f0f4f14774754f74a54491 *man/nltt_diff_exact_calc_extinct.Rd
a62add6885f8b6e67118fbd2531f9fbb *man/nltt_diff_exact_extinct.Rd
6c8e4de9ba8acf56bc2ccedff7857f26 *man/nltt_diff_exact_norm_brts.Rd
30bfc165c8238ae5a792faef962589d4 *man/nltt_lines.Rd
4bfd2d105dfbb903d88f26c4a13a4b72 *man/nltt_plot.Rd
45a115c69179fc60b0aa3da71281be69 *man/nltts_diff.Rd
a6196d7192e47036decb9da126afdd78 *man/nltts_plot.Rd
172160a5a643d0a02915a0620633e3ce *man/stretch_nltt_matrix.Rd
b8b50ed3f56a110f64210a94d25e359a *tests/testthat.R
56b94f29f7dcd7aa2b38a9b8c9db395b *tests/testthat/Rplots.pdf
0ca79e43bd24247e11688a7b703f1cb7 *tests/testthat/test-abc_smc_nltt.R
1e4c6b03d7113aee6b15ab892c3323f5 *tests/testthat/test-calculate_weight.R
2b7af2726c63a3595d2cd2d1538ba980 *tests/testthat/test-check_phylogenies.R
06b7c9701099f17156559eb2c25ae216 *tests/testthat/test-check_step_type.R
4a8fc10ecf982b3a9b4e1c130862e934 *tests/testthat/test-check_time_unit.R
d18c2d13ddd60c03a13e97559a223791 *tests/testthat/test-get_average_nltt.R
71fb12b4b85408392629000c0e68ccee *tests/testthat/test-get_average_nltt_matrix.R
4e11f27b2ebf7739931cef154de6fa41 *tests/testthat/test-get_branching_times.R
f0a8f8867ecc90358e5847b86b7a7ca9 *tests/testthat/test-get_n_lineages.R
b976fd004b27bb1722c7bdd3d605b758 *tests/testthat/test-get_nltt_values.R
5df785b0c3ba49d46cd6fbc4f4a01336 *tests/testthat/test-get_norm_brts.R
89037557c2b4661744b45a17ba4b2194 *tests/testthat/test-get_norm_n.R
051a5ae2c5f6bfc28a6eaf46f4c17b03 *tests/testthat/test-get_phylogeny_nltt_matrix.R
abfdd8b6137e832b41b56c4109c4a6fe *tests/testthat/test-log_transform.R
a24aa11b65f854821b53b7fa5362944c *tests/testthat/test-mcmc_nltt.R
225e3812b897786befc574f805c96dc2 *tests/testthat/test-nLTTDiff.R
45b145edac1182c11d88eed64bfae5b0 *tests/testthat/test-nLTTstat.R
9f518a57d06d2a0531ba174f763bc24e *tests/testthat/test-nLTTstat_exact.R
c0ca5fbf72c6cd4d51b50879c99a406a *tests/testthat/test-nltt_diff.R
8264c4a965fe1efc85e9709027690933 *tests/testthat/test-nltt_diff_exact.R
5cd6a1e558416fedd4707d6b0cae456d *tests/testthat/test-nltt_diff_exact_brts.R
ccfbf9567494e52398455f92e79a6959 *tests/testthat/test-nltt_diff_exact_extinct.R
5bbced9bad3d799e5ea2b5f0f64cbf4c *tests/testthat/test-nltt_diff_exact_norm_brts.R
b2df9e6de4c15e27c634b4d35a46bf64 *tests/testthat/test-nltt_plot.R
cb09f28a8d78c8ba54ef131ee8eedfbd *tests/testthat/test-nltts_diff.R
9717484e929607fb0ec307886088535f *tests/testthat/test-nltts_plot.R
211dabf423813bdd556de4e8095d6dea *tests/testthat/test-stretch_nltt_matrix.R
6863f26a193befcc4d1b1b1f76991b0e *tests/testthat/test-style.R
3506560f591c8039e5c1e76d504f96d2 *vignettes/get_nltt_values.Rmd
ecb2353764254399f6b71f6b94e95a81 *vignettes/nltt_diff.Rmd
b4c4e5443584ae181c777e7d8cc279c6 *vignettes/nltts_plot.Rmd
650f9716d1cd0d6518a8494e30dc9492 *vignettes/stretch_nltt_matrix.Rmd
068430379ec0d84e33bf712fb062034f *vignettes/trees_with_root_edge.Rmd
7b31f17e6e07c0601d544947432f2a01 *vignettes/walkthrough.Rmd
