Last updated on 2026-01-13 07:49:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.7 | 6.83 | 112.09 | 118.92 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.7 | 3.82 | 88.52 | 92.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.7 | 12.00 | 242.35 | 254.35 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.7 | 10.00 | 152.51 | 162.51 | ERROR | |
| r-devel-windows-x86_64 | 0.0.7 | 8.00 | 254.00 | 262.00 | OK | |
| r-patched-linux-x86_64 | 0.0.7 | 5.10 | 107.35 | 112.45 | OK | |
| r-release-linux-x86_64 | 0.0.7 | 4.70 | 110.52 | 115.22 | OK | |
| r-release-macos-arm64 | 0.0.7 | 1.00 | 76.00 | 77.00 | OK | |
| r-release-macos-x86_64 | 0.0.7 | 4.00 | 280.00 | 284.00 | OK | |
| r-release-windows-x86_64 | 0.0.7 | 8.00 | 256.00 | 264.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.7 | 1.00 | 86.00 | 87.00 | OK | |
| r-oldrel-macos-x86_64 | 0.0.7 | 4.00 | 289.00 | 293.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.7 | 11.00 | 365.00 | 376.00 | OK |
Version: 0.0.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> Sys.setenv("OMP_THREAD_LIMIT" = 2)
> Sys.setenv("Ncpu" = 2)
>
> library(testthat)
> library(mlsurvlrnrs)
>
> test_check("mlsurvlrnrs")
CV fold: Fold1
Parameter 'ncores' is ignored for learner 'LearnerSurvCoxPHCox'.
CV fold: Fold2
Parameter 'ncores' is ignored for learner 'LearnerSurvCoxPHCox'.
CV fold: Fold3
Parameter 'ncores' is ignored for learner 'LearnerSurvCoxPHCox'.
CV fold: Fold1
Saving _problems/test-surv_glmnet_cox-99.R
CV fold: Fold1
Number of rows of initialization grid > than 'options("mlexperiments.bayesian.max_init")'...
... reducing initialization grid to 10 rows.
Saving _problems/test-surv_ranger_cox-110.R
CV fold: Fold1
Number of rows of initialization grid > than 'options("mlexperiments.bayesian.max_init")'...
... reducing initialization grid to 10 rows.
Saving _problems/test-surv_rpart_cox-108.R
CV fold: Fold1
Number of rows of initialization grid > than 'options("mlexperiments.bayesian.max_init")'...
... reducing initialization grid to 10 rows.
Saving _problems/test-surv_xgboost_aft-121.R
CV fold: Fold1
CV fold: Fold2
CV fold: Fold3
CV fold: Fold1
Number of rows of initialization grid > than 'options("mlexperiments.bayesian.max_init")'...
... reducing initialization grid to 10 rows.
Saving _problems/test-surv_xgboost_cox-118.R
CV fold: Fold1
CV fold: Fold2
CV fold: Fold3
[ FAIL 5 | WARN 0 | SKIP 1 | PASS 9 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-lints.R:10:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-surv_glmnet_cox.R:99:5'): test nested cv, grid - surv_glmnet_cox ──
Error: Package "ParBayesianOptimization" must be installed to use 'strategy = "bayesian"'.
Backtrace:
▆
1. └─surv_glmnet_cox_optimizer$execute() at test-surv_glmnet_cox.R:99:5
2. └─mlexperiments:::.run_cv(self = self, private = private)
3. └─mlexperiments:::.fold_looper(self, private)
4. ├─base::do.call(private$cv_run_model, run_args)
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─private$select_optimizer(self, private)
10. └─BayesianOptimizer$new(...)
11. └─mlexperiments (local) initialize(...)
── Error ('test-surv_ranger_cox.R:110:5'): test nested cv, bayesian - surv_ranger_cox ──
Error: Package "ParBayesianOptimization" must be installed to use 'strategy = "bayesian"'.
Backtrace:
▆
1. └─surv_ranger_cox_optimizer$execute() at test-surv_ranger_cox.R:110:5
2. └─mlexperiments:::.run_cv(self = self, private = private)
3. └─mlexperiments:::.fold_looper(self, private)
4. ├─base::do.call(private$cv_run_model, run_args)
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─private$select_optimizer(self, private)
10. └─BayesianOptimizer$new(...)
11. └─mlexperiments (local) initialize(...)
── Error ('test-surv_rpart_cox.R:108:5'): test nested cv, bayesian - surv_rpart_cox ──
Error: Package "ParBayesianOptimization" must be installed to use 'strategy = "bayesian"'.
Backtrace:
▆
1. └─surv_rpart_cox_optimizer$execute() at test-surv_rpart_cox.R:108:5
2. └─mlexperiments:::.run_cv(self = self, private = private)
3. └─mlexperiments:::.fold_looper(self, private)
4. ├─base::do.call(private$cv_run_model, run_args)
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─private$select_optimizer(self, private)
10. └─BayesianOptimizer$new(...)
11. └─mlexperiments (local) initialize(...)
── Error ('test-surv_xgboost_aft.R:121:3'): test nested cv, bayesian - surv_xgboost_aft ──
Error: Package "ParBayesianOptimization" must be installed to use 'strategy = "bayesian"'.
Backtrace:
▆
1. └─surv_xgboost_aft_optimizer$execute() at test-surv_xgboost_aft.R:121:3
2. └─mlexperiments:::.run_cv(self = self, private = private)
3. └─mlexperiments:::.fold_looper(self, private)
4. ├─base::do.call(private$cv_run_model, run_args)
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─private$select_optimizer(self, private)
10. └─BayesianOptimizer$new(...)
11. └─mlexperiments (local) initialize(...)
── Error ('test-surv_xgboost_cox.R:118:3'): test nested cv, bayesian - surv_xgboost_cox ──
Error: Package "ParBayesianOptimization" must be installed to use 'strategy = "bayesian"'.
Backtrace:
▆
1. └─surv_xgboost_cox_optimizer$execute() at test-surv_xgboost_cox.R:118:3
2. └─mlexperiments:::.run_cv(self = self, private = private)
3. └─mlexperiments:::.fold_looper(self, private)
4. ├─base::do.call(private$cv_run_model, run_args)
5. └─mlexperiments (local) `<fn>`(train_index = `<int>`, fold_train = `<named list>`, fold_test = `<named list>`)
6. ├─base::do.call(.cv_run_nested_model, args)
7. └─mlexperiments (local) `<fn>`(...)
8. └─hparam_tuner$execute(k = self$k_tuning)
9. └─private$select_optimizer(self, private)
10. └─BayesianOptimizer$new(...)
11. └─mlexperiments (local) initialize(...)
[ FAIL 5 | WARN 0 | SKIP 1 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc